Detailed information of SNP:
|
SNP ID:
sf1210366272(Gbrowse)
Chromosome: chr12 Position: 10366272 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1273 | 79.73% | 20.27% |
| All Indica | 671 | 69.90% | 30.10% |
| All Japonica | 487 | 95.28% | 4.72% |
| Aus | 62 | 62.90% | 37.10% |
| Indica I | 308 | 63.31% | 36.69% |
| Indica II | 180 | 79.44% | 20.56% |
| Indica Intermediate | 183 | 71.58% | 28.42% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210366272 | T->C | LOC_Os12g18030(LOC_Os12g18030.1) | INTRON |