Detailed information of SNP:
|
SNP ID:
sf1210368685(Gbrowse)
Chromosome: chr12 Position: 10368685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 93.73% | 6.27% |
| All Indica | 757 | 91.81% | 8.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 347 | 90.49% | 9.51% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210368685 | C->T | LOC_Os12g18040(LOC_Os12g18040.1) | Synonymous |