Detailed information of SNP:
|
SNP ID:
sf1210369522(Gbrowse)
Chromosome: chr12 Position: 10369522 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.41% | 35.59% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 495 | 11.52% | 88.48% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 333 | 3.90% | 96.10% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210369522 | A->G | LOC_Os12g18040(LOC_Os12g18040.1) | Synonymous |