Detailed information of SNP:
|
SNP ID:
sf1210374657(Gbrowse)
Chromosome: chr12 Position: 10374657 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 96.48% | 3.52% |
| All Indica | 778 | 94.22% | 5.78% |
| All Japonica | 492 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 96.16% | 3.84% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 205 | 90.73% | 9.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210374657 | A->T | INTERGENIC | None |