Detailed information of SNP:
|
SNP ID:
sf1210383213(Gbrowse)
Chromosome: chr12 Position: 10383213 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 68.15% | 31.85% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 495 | 16.77% | 83.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210383213 | C->G | LOC_Os12g18060(LOC_Os12g18060.1) | Non-Synonymous SNP |