Detailed information of SNP:
|
SNP ID:
sf1210387888(Gbrowse)
Chromosome: chr12 Position: 10387888 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 91.67% | 8.33% |
| All Indica | 797 | 93.48% | 6.52% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210387888 | A->G | INTERGENIC | None |