Detailed information of SNP:
|
SNP ID:
sf1210391387(Gbrowse)
Chromosome: chr12 Position: 10391387 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 81.09% | 18.91% |
| All Indica | 797 | 79.42% | 20.58% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 209 | 78.47% | 21.53% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210391387 | G->A | LOC_Os12g18080(LOC_Os12g18080.1) | Non-Synonymous SNP |