Detailed information of SNP:
|
SNP ID:
sf1210398047(Gbrowse)
Chromosome: chr12 Position: 10398047 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.47% | 29.53% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 30.18% | 69.82% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210398047 | A->G | LOC_Os12g18090(LOC_Os12g18090.1) | INTRON |