Detailed information of SNP:
|
SNP ID:
sf1210398673(Gbrowse)
Chromosome: chr12 Position: 10398673 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 78.02% | 21.98% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 435 | 36.32% | 63.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 285 | 30.53% | 69.47% |
| Tropical Japonica | 86 | 44.19% | 55.81% |
| Japonica Intermediate | 64 | 51.56% | 48.44% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210398673 | T->C | LOC_Os12g18090(LOC_Os12g18090.1) | INTRON |