Detailed information of SNP:
|
SNP ID:
sf1210403850(Gbrowse)
Chromosome: chr12 Position: 10403850 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 68.72% | 31.28% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 29.38% | 70.62% |
| Aus | 62 | 90.32% | 9.68% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210403850 | C->T | LOC_Os12g18100(LOC_Os12g18100.1) | INTRON |