Detailed information of SNP:



SNP ID: sf1210411652(Gbrowse)

Chromosome: chr12

Position: 10411652
Major allele: C

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1404 70.37% 29.63%
All Indica793 95.84% 4.16%
All Japonica495 29.90% 70.10%
Aus61 68.85% 31.15%
Indica I373 98.93% 1.07%
Indica II211 89.10% 10.90%
Indica Intermediate209 97.13% 2.87%
Temperate Japonica333 23.72% 76.28%
Tropical Japonica94 38.30% 61.70%
Japonica Intermediate68 48.53% 51.47%
Group VI/Aromatic14 85.71% 14.29%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1210411652 A->C INTERGENIC None