Detailed information of SNP:
|
SNP ID:
sf1210411652(Gbrowse)
Chromosome: chr12 Position: 10411652 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 70.37% | 29.63% |
| All Indica | 793 | 95.84% | 4.16% |
| All Japonica | 495 | 29.90% | 70.10% |
| Aus | 61 | 68.85% | 31.15% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 333 | 23.72% | 76.28% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210411652 | A->C | INTERGENIC | None |