Detailed information of SNP:
|
SNP ID:
sf1210411987(Gbrowse)
Chromosome: chr12 Position: 10411987 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 52.53% | 47.47% |
| All Indica | 763 | 33.16% | 66.84% |
| All Japonica | 492 | 84.76% | 15.24% |
| Aus | 54 | 27.78% | 72.22% |
| Indica I | 354 | 29.10% | 70.90% |
| Indica II | 205 | 38.54% | 61.46% |
| Indica Intermediate | 204 | 34.80% | 65.20% |
| Temperate Japonica | 331 | 92.45% | 7.55% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210411987 | G->A | INTERGENIC | None |