Detailed information of SNP:
|
SNP ID:
sf1210412656(Gbrowse)
Chromosome: chr12 Position: 10412656 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 60.78% | 39.22% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 370 | 90.27% | 9.73% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210412656 | C->T | INTERGENIC | None |