Detailed information of SNP:
|
SNP ID:
sf1210412754(Gbrowse)
Chromosome: chr12 Position: 10412754 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 70.25% | 29.75% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 495 | 26.26% | 73.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 19.22% | 80.78% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210412754 | G->T | INTERGENIC | None |