Detailed information of SNP:
|
SNP ID:
sf1210416201(Gbrowse)
Chromosome: chr12 Position: 10416201 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.85% | 27.15% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 30.58% | 69.42% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210416201 | A->G | LOC_Os12g18110(LOC_Os12g18110.2) | INTRON |
| sf1210416201 | A->G | LOC_Os12g18110(LOC_Os12g18110.3) | INTRON |