Detailed information of SNP:
|
SNP ID:
sf1210424873(Gbrowse)
Chromosome: chr12 Position: 10424873 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 63.34% | 36.66% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 30.38% | 69.62% |
| Aus | 63 | 49.21% | 50.79% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210424873 | C->T | INTERGENIC | None |