Detailed information of SNP:
|
SNP ID:
sf1210426719(Gbrowse)
Chromosome: chr12 Position: 10426719 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 62.58% | 37.42% |
| All Indica | 799 | 83.60% | 16.40% |
| All Japonica | 497 | 29.78% | 70.22% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210426719 | G->A | INTERGENIC | None |