Detailed information of SNP:
|
SNP ID:
sf1210428780(Gbrowse)
Chromosome: chr12 Position: 10428780 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.43% | 15.57% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 71.83% | 28.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210428780 | C->T | INTERGENIC | None |