Detailed information of SNP:
|
SNP ID:
sf1210464916(Gbrowse)
Chromosome: chr12 Position: 10464916 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 73.03% | 26.97% |
| All Indica | 778 | 97.43% | 2.57% |
| All Japonica | 495 | 30.10% | 69.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 99.72% | 0.28% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 333 | 24.32% | 75.68% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210464916 | A->G | INTERGENIC | None |