Detailed information of SNP:
|
SNP ID:
sf1210501959(Gbrowse)
Chromosome: chr12 Position: 10501959 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 72.83% | 27.17% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 30.58% | 69.42% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 25.37% | 74.63% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210501959 | T->G | INTERGENIC | None |