Detailed information of SNP:



SNP ID: sf1210517699(Gbrowse)

Chromosome: chr12

Position: 10517699
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 72.73% 27.27%
All Indica799 97.12% 2.88%
All Japonica497 30.18% 69.82%
Aus67 98.51% 1.49%
Indica I375 99.20% 0.80%
Indica II213 91.55% 8.45%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 24.48% 75.52%
Tropical Japonica94 40.43% 59.57%
Japonica Intermediate68 44.12% 55.88%
Group VI/Aromatic14 71.43% 28.57%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1210517699 T->C INTERGENIC None