Detailed information of SNP:
|
SNP ID:
sf1210523646(Gbrowse)
Chromosome: chr12 Position: 10523646 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 63.57% | 36.43% |
| All Indica | 792 | 45.83% | 54.17% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 39.78% | 60.22% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 208 | 38.46% | 61.54% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210523646 | C->T | INTERGENIC | None |