Detailed information of SNP:
|
SNP ID:
sf1210548520(Gbrowse)
Chromosome: chr12 Position: 10548520 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 73.22% | 26.78% |
| All Indica | 796 | 96.11% | 3.89% |
| All Japonica | 497 | 32.39% | 67.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 25.97% | 74.03% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210548520 | G->A | INTERGENIC | None |