Detailed information of SNP:
|
SNP ID:
sf1210550810(Gbrowse)
Chromosome: chr12 Position: 10550810 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 85.54% | 14.46% |
| All Indica | 779 | 91.14% | 8.86% |
| All Japonica | 490 | 87.35% | 12.65% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 362 | 89.78% | 10.22% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 206 | 87.38% | 12.62% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210550810 | A->C | LOC_Os12g18290(LOC_Os12g18290.1) | INTRON |