Detailed information of SNP:
SNP ID:
sf1210559000(Gbrowse)
Chromosome: chr12 Position: 10559000 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 73.29% | 26.71% |
All Indica | 799 | 97.25% | 2.75% |
All Japonica | 497 | 30.58% | 69.42% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 25.07% | 74.93% |
Tropical Japonica | 94 | 38.30% | 61.70% |
Japonica Intermediate | 68 | 47.06% | 52.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1210559000 | A->G | INTERGENIC | None |