Detailed information of SNP:



SNP ID: sf1210559000(Gbrowse)

Chromosome: chr12

Position: 10559000
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 73.29% 26.71%
All Indica799 97.25% 2.75%
All Japonica497 30.58% 69.42%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 92.49% 7.51%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica335 25.07% 74.93%
Tropical Japonica94 38.30% 61.70%
Japonica Intermediate68 47.06% 52.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1210559000 A->G INTERGENIC None