Detailed information of SNP:
|
SNP ID:
sf1210561885(Gbrowse)
Chromosome: chr12 Position: 10561885 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 65.13% | 34.87% |
| All Indica | 759 | 88.14% | 11.86% |
| All Japonica | 497 | 29.38% | 70.62% |
| Aus | 61 | 70.49% | 29.51% |
| Indica I | 353 | 90.65% | 9.35% |
| Indica II | 203 | 80.30% | 19.70% |
| Indica Intermediate | 203 | 91.63% | 8.37% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210561885 | A->G | INTERGENIC | None |