Detailed information of SNP:



SNP ID: sf1210561885(Gbrowse)

Chromosome: chr12

Position: 10561885
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1371 65.13% 34.87%
All Indica759 88.14% 11.86%
All Japonica497 29.38% 70.62%
Aus61 70.49% 29.51%
Indica I353 90.65% 9.35%
Indica II203 80.30% 19.70%
Indica Intermediate203 91.63% 8.37%
Temperate Japonica335 24.48% 75.52%
Tropical Japonica94 34.04% 65.96%
Japonica Intermediate68 47.06% 52.94%
Group VI/Aromatic14 57.14% 42.86%
Intermediate40 67.50% 32.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1210561885 A->G INTERGENIC None