Detailed information of SNP:
|
SNP ID:
sf1210568913(Gbrowse)
Chromosome: chr12 Position: 10568913 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.88% | 28.12% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 29.98% | 70.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210568913 | T->C | INTERGENIC | None |