Detailed information of SNP:
|
SNP ID:
sf1210571621(Gbrowse)
Chromosome: chr12 Position: 10571621 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 68.47% | 31.53% |
| All Indica | 771 | 90.01% | 9.99% |
| All Japonica | 497 | 30.18% | 69.82% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 354 | 89.83% | 10.17% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210571621 | A->G | INTERGENIC | None |