Detailed information of SNP:
|
SNP ID:
sf1210577698(Gbrowse)
Chromosome: chr12 Position: 10577698 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.59% | 28.41% |
| All Indica | 796 | 94.60% | 5.40% |
| All Japonica | 497 | 30.38% | 69.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210577698 | T->C | LOC_Os12g18330(LOC_Os12g18330.1) | Non-Synonymous SNP |