Detailed information of SNP:
|
SNP ID:
sf1210578661(Gbrowse)
Chromosome: chr12 Position: 10578661 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.41% | 33.59% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210578661 | A->G | INTERGENIC | None |