Detailed information of SNP:
|
SNP ID:
sf1210579380(Gbrowse)
Chromosome: chr12 Position: 10579380 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 95.02% | 4.98% |
| All Indica | 773 | 93.66% | 6.34% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 79.03% | 20.97% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 198 | 80.81% | 19.19% |
| Indica Intermediate | 204 | 94.61% | 5.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210579380 | A->T | INTERGENIC | None |