Detailed information of SNP:
|
SNP ID:
sf1210594032(Gbrowse)
Chromosome: chr12 Position: 10594032 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 94.68% | 5.32% |
| All Indica | 772 | 90.41% | 9.59% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 88.09% | 11.91% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 202 | 92.57% | 7.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210594032 | C->T | LOC_Os12g18350(LOC_Os12g18350.1) | Non-Synonymous SNP |