Detailed information of SNP:
|
SNP ID:
sf1210594184(Gbrowse)
Chromosome: chr12 Position: 10594184 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 71.65% | 28.35% |
| All Indica | 785 | 95.54% | 4.46% |
| All Japonica | 496 | 29.64% | 70.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 98.09% | 1.91% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210594184 | A->G | LOC_Os12g18350(LOC_Os12g18350.1) | Non-Synonymous SNP |