Detailed information of SNP:
|
SNP ID:
sf1210595001(Gbrowse)
Chromosome: chr12 Position: 10595001 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 64.85% | 35.15% |
| All Indica | 795 | 92.33% | 7.67% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210595001 | C->T | LOC_Os12g18350(LOC_Os12g18350.1) | INTRON |