Detailed information of SNP:
|
SNP ID:
sf1210595495(Gbrowse)
Chromosome: chr12 Position: 10595495 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1259 | 53.38% | 46.62% |
| All Indica | 719 | 79.97% | 20.03% |
| All Japonica | 430 | 3.49% | 96.51% |
| Aus | 59 | 81.36% | 18.64% |
| Indica I | 329 | 79.03% | 20.97% |
| Indica II | 197 | 80.71% | 19.29% |
| Indica Intermediate | 193 | 80.83% | 19.17% |
| Temperate Japonica | 275 | 4.36% | 95.64% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 61 | 4.92% | 95.08% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210595495 | T->C | LOC_Os12g18350(LOC_Os12g18350.1) | Non-Synonymous SNP |