Detailed information of SNP:
|
SNP ID:
sf1210596680(Gbrowse)
Chromosome: chr12 Position: 10596680 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 70.22% | 29.78% |
| All Indica | 782 | 92.71% | 7.29% |
| All Japonica | 494 | 30.16% | 69.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 93.77% | 6.23% |
| Indica II | 208 | 91.83% | 8.17% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 25.07% | 74.93% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210596680 | T->C | LOC_Os12g18350(LOC_Os12g18350.1) | Non-Synonymous SNP |