Detailed information of SNP:



SNP ID: sf1210617923(Gbrowse)

Chromosome: chr12

Position: 10617923
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 73.62% 26.38%
All Indica799 97.62% 2.38%
All Japonica497 30.58% 69.42%
Aus67 98.51% 1.49%
Indica I375 99.73% 0.27%
Indica II213 92.49% 7.51%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 24.78% 75.22%
Tropical Japonica94 39.36% 60.64%
Japonica Intermediate68 47.06% 52.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 78.05% 21.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1210617923 T->C INTERGENIC None