Detailed information of SNP:
SNP ID:
sf1210617923(Gbrowse)
Chromosome: chr12 Position: 10617923 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 73.62% | 26.38% |
All Indica | 799 | 97.62% | 2.38% |
All Japonica | 497 | 30.58% | 69.42% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 92.49% | 7.51% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 24.78% | 75.22% |
Tropical Japonica | 94 | 39.36% | 60.64% |
Japonica Intermediate | 68 | 47.06% | 52.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1210617923 | T->C | INTERGENIC | None |