Detailed information of SNP:
|
SNP ID:
sf1210624218(Gbrowse)
Chromosome: chr12 Position: 10624218 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.08% | 26.92% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 30.78% | 69.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 25.07% | 74.93% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210624218 | A->G | LOC_Os12g18374(LOC_Os12g18374.1) | INTRON |
| sf1210624218 | A->G | LOC_Os12g18374(LOC_Os12g18374.2) | INTRON |