Detailed information of SNP:
|
SNP ID:
sf1210639243(Gbrowse)
Chromosome: chr12 Position: 10639243 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 54.69% | 45.31% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210639243 | A->G | INTERGENIC | None |