Detailed information of SNP:
|
SNP ID:
sf1210645402(Gbrowse)
Chromosome: chr12 Position: 10645402 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.43% | 15.57% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 71.43% | 28.57% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210645402 | C->T | LOC_Os12g18400(LOC_Os12g18400.1) | INTRON |