Detailed information of SNP:
|
SNP ID:
sf1210647159(Gbrowse)
Chromosome: chr12 Position: 10647159 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.18% | 26.82% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 496 | 33.87% | 66.13% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 29.85% | 70.15% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210647159 | A->G | INTERGENIC | None |