Detailed information of SNP:
|
SNP ID:
sf1210647238(Gbrowse)
Chromosome: chr12 Position: 10647238 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.99% | 26.01% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 35.01% | 64.99% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210647238 | A->G | INTERGENIC | None |