Detailed information of SNP:
|
SNP ID:
sf1210654757(Gbrowse)
Chromosome: chr12 Position: 10654757 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 72.72% | 27.28% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 35.01% | 64.99% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210654757 | T->C | LOC_Os12g18420(LOC_Os12g18420.1) | INTRON |