Detailed information of SNP:
|
SNP ID:
sf1210654797(Gbrowse)
Chromosome: chr12 Position: 10654797 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.26% | 25.74% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 34.81% | 65.19% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210654797 | T->C | LOC_Os12g18420(LOC_Os12g18420.1) | INTRON |