Detailed information of SNP:
|
SNP ID:
sf1210657129(Gbrowse)
Chromosome: chr12 Position: 10657129 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.51% | 27.49% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 34.41% | 65.59% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210657129 | A->G | LOC_Os12g18420(LOC_Os12g18420.1) | Non-Synonymous SNP |