Detailed information of SNP:
|
SNP ID:
sf1210657844(Gbrowse)
Chromosome: chr12 Position: 10657844 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.07% | 28.93% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 34.81% | 65.19% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210657844 | T->C | INTERGENIC | None |