Detailed information of SNP:
|
SNP ID:
sf1210685489(Gbrowse)
Chromosome: chr12 Position: 10685489 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.49% | 27.51% |
| All Indica | 796 | 94.72% | 5.28% |
| All Japonica | 497 | 35.21% | 64.79% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210685489 | A->G | LOC_Os12g18479(LOC_Os12g18479.1) | INTRON |