Detailed information of SNP:
|
SNP ID:
sf1210688086(Gbrowse)
Chromosome: chr12 Position: 10688086 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.00% | 11.00% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210688086 | T->A | INTERGENIC | None |