Detailed information of SNP:
|
SNP ID:
sf1210690972(Gbrowse)
Chromosome: chr12 Position: 10690972 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 71.93% | 28.07% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 35.01% | 64.99% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210690972 | T->C | INTERGENIC | None |