Detailed information of SNP:
|
SNP ID:
sf1210703331(Gbrowse)
Chromosome: chr12 Position: 10703331 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 85.18% | 14.82% |
| All Indica | 729 | 82.44% | 17.56% |
| All Japonica | 486 | 87.04% | 12.96% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 344 | 71.80% | 28.20% |
| Indica II | 197 | 97.46% | 2.54% |
| Indica Intermediate | 188 | 86.17% | 13.83% |
| Temperate Japonica | 326 | 98.47% | 1.53% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1210703331 | C->T | INTERGENIC | None |